ResearchDataFile¶
Description¶
A Research Data File is a File that contains raw data originating from an Experiment.
Fields¶
format¶
description : The file format of the Research Data File (e.g., FASTQ, uBAM, FASTA).
required : True
data type : Controlled Vocabulary
Permissible Values
| Permissible Values | Description |
|---|---|
FASTA |
FASTA format including NCBI-style IDs. |
FASTQ |
FASTQ short read format ignoring quality scores. |
UBAM |
Unaligned BAM file. |
FAST5 |
FAST5 data format for Nanopore. |
RAW |
Raw file format for mass spectrometry proteomics data. |
D |
Raw .d files for mass spectrometry proteomics data. |
MZML |
mzML format for mass spectrometry proteomics data. |
MZDATA |
mzData for mass spectrometry proteomics data. |
IDAT |
IDAT file format for BeadArray data. |
OTHER |
A file format not captured by the controlled vocabulary. |
technical_replicate¶
description : An integer to indicate the technical replicate of this File.
required : True
data type : integer
sequencing_lane_id¶
description : The identifier of a sequencing lane.
required : False
data type : string
experiments¶
description : The aliases of the Experiments that produced this Research Data File.
required : True
data type : Experiment
name¶
description : The given filename.
required : True
data type : string
dataset¶
description : The Dataset alias associated with this File.
required : True
data type : Dataset
ega_accession¶
description : The EGA accession ID of an entity.
required : False
data type : string
included_in_submission¶
description : Whether a File is included in the Submission or not.
required : True
data type : boolean
alias¶
description : The alias for an entity at the time of submission.
required : True
data type : string